Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Lung

Cell type

Calu-3

Primary Tissue

Lung

Tissue Diagnosis

Adenocarcinoma

Sample

age

25 year

sample type

cell line

cell line

Calu3

sex

male

health state

Lung adenocarcinoma

dev stage

adult

donor ID

ENCDO109DGE

lab

Bradley Bernstein, Broad

source

Mats Ljungman

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

16763621

Reads aligned (%)

96.4

Duplicates removed (%)

5.5

Number of peaks

18017 (qval < 1E-05)

hg19

Number of total reads

16763621

Reads aligned (%)

95.8

Duplicates removed (%)

6.5

Number of peaks

17911 (qval < 1E-05)