Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
Calu-3
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

age
25 year
sample type
cell line
cell line
Calu3
sex
male
health state
Lung adenocarcinoma
dev stage
adult
donor ID
ENCDO109DGE
lab
Bradley Bernstein, Broad
source
Mats Ljungman

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
16763621
Reads aligned (%)
96.4
Duplicates removed (%)
5.5
Number of peaks
18017 (qval < 1E-05)

hg19

Number of total reads
16763621
Reads aligned (%)
95.8
Duplicates removed (%)
6.5
Number of peaks
17911 (qval < 1E-05)

Base call quality data from DBCLS SRA